Scaffold Ga0103958_1171223

Overview

Basic Information

• Taxon OID: 3300007212
• Scaffold ID: Ga0103958_1171223
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Bottom layer) 7 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5048
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.409238
  • Long. (^o): 103.907928

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026828	Metagenome	196	Y
F036110	Metagenome / Metatranscriptome	170	N
F094995	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103958_11712234	F026828	N/A	MITEELVVNAIVFIAGWILKRPALVEKFVDKLFKKKD*
Ga0103958_11712235	F036110	AGAAGG	MTEWIFFGATVLVSVTGFLISRELSRVSDELKHLRQDVFRLSVDLAKLEERIDSIL*
Ga0103958_11712239	F094995	N/A	MFLKERYTNLARTLEAMQIQIEDSLEYARYFTPTGETPRSLFHLLKQHTVYRNDPPGVELLQSMPTMMENNWWGVRGAGDCDCFTIAAVACCAVEKIPCRIVLVGNSTNCPTHVYCEVLDKGRWTAFDLVAPFYGETKKYKYLSRVNVKPKF*