Scaffold Ga0103958

Basic Information
Taxon OID	3300007212 Open in IMG/M
Scaffold ID	Ga0103958_1045957 Open in IMG/M
Source Dataset Name	Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Bottom layer) 7 sequencing projects
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	The Singapore Centre on Environmental Life Sciences Engineering
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Bottom layer) 7 sequencing projects

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

The Singapore Centre on Environmental Life Sciences Engineering

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5857
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (21.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5857

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (21.43%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle)

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.409238	Long. (^o)	103.907928	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Singapore

Coordinates

Lat. (^o)

1.409238

Long. (^o)

103.907928

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F003659	Metagenome / Metatranscriptome	474	Y
F006697	Metagenome / Metatranscriptome	366	Y
F022872	Metagenome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103958_10459572	F006697	N/A	MANQVSKLAYVDAKLGVGLPGQQTTRVIYDSVNATAGQQFFEFFTNFAGKNEFQTNLTTNKLDSAESMVIKSIQIIANSAAGVTSDHLNLNITVGNQVVLKDFDPSFNCTNRGLSFDRLHSGFNGSTNLEVRLLTDIVIPPQVNFKATLQLASNALLLNDDVTIVLKGYGRIFSAGNSF*
Ga0103958_10459573	F000710	N/A	MASNINISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIIFSAVASGAPQTPISATQLRVTLTINNDVVIDDVAAVNLGAEVGAGVTSGFPHFIPFPRALTGQDTILLRVTNSSGASQILNATVYYKNEI*
Ga0103958_10459574	F022872	N/A	MSWQIPTEIEKDFKSGKAQYRTFQTGVGGQSILPVPANSYAVIFGYDFSPAGGGFTRTDVLGFGTRLNDVFMRWFETQQISFYTGTDFYPFIHHINVESSIASFQQSDTLISQMWSIDNTPISRQVYITSSNDVTITVGLILDSDVASANAIPVTNRTPQGLTYGGSGQVVATQTDFGPALTPQQFMQPSPKDYADFAFGLLPANADGQAFATPDLGRGLRDASQFLNSLDPTFRDAAACNYFLNLHYALYTETIPEQRG*
Ga0103958_10459579	F003659	N/A	MPTVSANDVIGRYLIALEDVPVYDVPNGTRIGEIKKGNSTAEVFSYVQRPGGQVWWAFDYTIPGQSPSSYYVLHKEGRFRLSRAAGNTIVTPASIPGVDVFPKGADLKKYAVYGGLALAALLLLRK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0103958_1045957

Overview

Ecosystem & Geography

Associated Families

Sequences