NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103274_1189569

Scaffold Ga0103274_1189569


Overview

Basic Information
Taxon OID3300007202 Open in IMG/M
Scaffold IDGa0103274_1189569 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Monthly Sampling-Site C) 9 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNational University of Singapore, Singapore-MIT Alliance for Research and Technology, The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5424
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (31.58%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freashwater Reservoir, Singapore (Monthly Sampling)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.286816Long. (o)103.867024Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007859Metagenome / Metatranscriptome343Y
F009135Metagenome / Metatranscriptome322Y
F010081Metagenome / Metatranscriptome308Y
F010397Metagenome / Metatranscriptome304Y
F024047Metagenome / Metatranscriptome207N
F042296Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0103274_118956912F010081N/AMQDKIDSIIKKHCLRMQDVDKNKSIPMIVKQLDGIVYDMYRELYGLRDIRADNYYLNSFTADNKKGHCC*
Ga0103274_118956913F007859AGAAGMKKLLIIALLSTGCTSGMYLRYNYYKALERLPQCSKVHSVNNKYITYSMIENSTNNVYTVHTNYYHAYYNCDGVIYKIVKSDAR*
Ga0103274_118956914F042296N/AMNLFKSVIKWTGIGLFACFAYAATLPEPVKLYVIYTYKFNERVIEKIYIKKENAQKYCDQFKDSHDYTFEEVTVKE*
Ga0103274_118956916F009135N/AMSNAKFYLQINLPPNFDESDADVIKNDLMAYINSKNQYGAMYGPKSSKKGITINKVLYRTNED*
Ga0103274_118956917F024047GGAMTIVKKSDIVDWLKNAVETRMIEELKVPNAKVYLSCDRPNPDIILETKNSDGDLQIVRFLII*
Ga0103274_11895696F010397AGGAGMNINEFERTKPVVTMQKINELIKLIDDERVKTEILYKDRVRSLDDISVLLKDMKKSFTKGE*
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