Scaffold Ga0102978_1293232

Overview

Basic Information

• Taxon OID: 3300007177
• Scaffold ID: Ga0102978_1293232
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface and Bottom layers) 16 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1129
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.286816
  • Long. (^o): 103.867024

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022860	Metagenome / Metatranscriptome	212	Y
F029720	Metagenome / Metatranscriptome	187	N
F052558	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102978_12932321	F052558	GAGG	MSKVDIAKLPIVKVKLCSHLKNAEPGELGPDLLRKIEGKGQLHHCAADAYEAMDAAANADGIDLSPTSPADTYRSLAVQEYGFFQRYTDDPKPALMK
Ga0102978_12932322	F029720	N/A	MEKLKNILFRIFALFGSSALAAVAGGAIIGVELWKSAALAGLMACAQVVEKLLRFSVDGTLTKEEIEAAFSGAGAPKKKDEAAS*
Ga0102978_12932323	F022860	AGTAG	MRKFFNFLSENSWTYAGTGMVLITLSGPTLRSALWITGVTLILHSALTLSQKD*