Scaffold Ga0102978_1053354

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102978_1053354

Scaffold Ga0102978_1053354

Overview

Basic Information
Taxon OID	3300007177 Open in IMG/M
Scaffold ID	Ga0102978_1053354 Open in IMG/M
Source Dataset Name	Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface and Bottom layers) 16 sequencing projects
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2436
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.286816	Long. (^o)	103.867024	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003521	Metagenome / Metatranscriptome	481	Y
F011751	Metagenome / Metatranscriptome	287	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102978_10533541	F011751	N/A	KDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYADDYNIQQLAAACGQGAPFMDALSMENYEFIDRKMINIDLALGFLSDENRLTRQQLITAAQTQFAQAMMMLDPSVPELFEKVRRPYADTLRVLGVKDVDAYLPTIEEAAKMFQAKAQQGPGAAEQELMSKTELNKAKTQESQTVAALNIKKAEDIDTDNMFEALAAKRGKLSSVQID*
Ga0102978_10533542	F003521	AGGA	MKSMLKDIRAYFNRRTRVTDTYKEANVSRKTLVIENGESASRLLKNEDFALLFNLYRFQMLERLEDARDDADRLSNAYYVAGARDFIDFIEKQEYLAKRVNVETNS*

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