Scaffold Ga0102978_1025030

Overview

Basic Information

• Taxon OID: 3300007177
• Scaffold ID: Ga0102978_1025030
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface and Bottom layers) 16 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20125
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (64.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.286816
  • Long. (^o): 103.867024

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002621	Metagenome / Metatranscriptome	542	Y
F014610	Metagenome / Metatranscriptome	261	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102978_10250301	F014610	N/A	IEHIAPMGTDSITIKGERWKRQPVARFGVTGFAREPQLKDHVKRGFSRLEDRQGSRFESTFTKSQIRKIWDI*
Ga0102978_10250309	F002621	N/A	MRPKISKLIWLGALPTFLGCQMTKVVLVPSGDPVMLAAPVKARVYAFDSNKKLVGPSTVVLPAGWYALPKN*