NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102977_1181999

Scaffold Ga0102977_1181999


Overview

Basic Information
Taxon OID3300007171 Open in IMG/M
Scaffold IDGa0102977_1181999 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface layer) 8 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2532
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.286816Long. (o)103.867024Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012200Metagenome / Metatranscriptome282Y
F032942Metagenome / Metatranscriptome178N

Sequences

Protein IDFamilyRBSSequence
Ga0102977_11819993F012200GGAGMSDPIETTRAALGGIKEAVKVGREIKETAKEVNTFLDEEAKARVAWKRKQQQMMRRGDMVWMEAVDEYRIIRQIRDAETQMYRDVEQEFGRAAVSEVKSLINQLRRDHRELNDEFYRNRMQARREWGGLLLVSALIYGIFKAIGVM*
Ga0102977_11819995F032942N/ASTGEIAADSMVSGDDSFYLVQKLRLGKGSIYGACGDWDKCLKMLQVLESGGELDSDTDVTVLEIRNDGLWIYEGTVIPARIKNDFWAIGTGANFAIAGMHLGLSPAEAVKLACLYDTSSHEPVDEMRLGGVRVRKKSSG*
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