Scaffold Ga0102976_1093887

Overview

Basic Information

• Taxon OID: 3300007169
• Scaffold ID: Ga0102976_1093887
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7734
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.286816
  • Long. (^o): 103.867024

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005633	Metagenome / Metatranscriptome	394	Y
F006262	Metagenome / Metatranscriptome	377	Y
F019637	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102976_10938871	F019637	N/A	PTHIQFLISQYGVANVAWFIRLMKRGTPPEQLANYCVPNAQDSRRDGVFRALQYAATVPNSMLPPEILNALKP*
Ga0102976_10938874	F006262	N/A	VFTYTVAIKRSYLRAVYSALGGSTLLAALAAKSIASSSVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLISDYELAVYFLNQDGIASPTDAQIYAKMMAVVLVAATSYGGDFSNFRREGTIRTGMT*
Ga0102976_10938877	F005633	AGG	MRIATTISVDRNGKAKIVAGPEVDASLQRTDFNTANVPEGGKLILWIQGALAPKIRKG*