Basic Information | |
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Taxon OID | 3300007169 Open in IMG/M |
Scaffold ID | Ga0102976_1049861 Open in IMG/M |
Source Dataset Name | Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | The Singapore Centre on Environmental Life Sciences Engineering |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8672 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (90.48%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle) |
Source Dataset Sampling Location | ||||||||
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Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.286816 | Long. (o) | 103.867024 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006618 | Metagenome | 368 | Y |
F006842 | Metagenome | 363 | Y |
F017469 | Metagenome / Metatranscriptome | 240 | Y |
F034906 | Metagenome | 173 | Y |
F053128 | Metagenome | 141 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0102976_104986111 | F006618 | AGGAG | MSKMKQQLEKEIVITGSREETTGWKRYIYFEYEGNKYEVNLYWEEFNGYDNYWREPNTEPEWVKKWDKETHEGMSFEGYLDELTWERNK* |
Ga0102976_104986112 | F053128 | GGAG | MKGYFVIDNQGTGWKEGYLWKSIKEIADSIRDYDDYKELEVSNLTHSQVCELWDFEYHRITPANCEKYGVRPSELTREKV* |
Ga0102976_104986113 | F006842 | GGAG | MKATPAICGDHLVPITECNCLDYLREIESSAKRLIQLTKEREQLK* |
Ga0102976_104986114 | F017469 | GGAG | MNICQFCGWEVKNFEWYHKYNGAIACDNCLMDSATEREKERANG* |
Ga0102976_104986119 | F034906 | AGG | MNNKQRLKAAADQAVRQRNYQRARQRAFTRLANTYPDTYRAYLEEEKQADEQMGKKWLDLDGNTRITKSRS* |
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