Scaffold Ga0102976_1029446

Overview

Basic Information

• Taxon OID: 3300007169
• Scaffold ID: Ga0102976_1029446
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9232
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.286816
  • Long. (^o): 103.867024

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F014610	Metagenome / Metatranscriptome	261	N
F031459	Metagenome / Metatranscriptome	182	N
F034152	Metagenome / Metatranscriptome	175	Y
F035286	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102976_10294461	F035286	AGGA	MPFQSTDALDDQMLLDGSTGFSTGVISATRPDAIPATSMESAINMDYDDFGNLVTRLGSVSLAGNSISSNWEDIITNWEATTGNFGSNLPINASVFSGFY
Ga0102976_102944610	F034152	N/A	VTTLALGTRLAGVGGGSVTPIDPPILRRDLLQEDEFFILLENGTDKIVITFGTFDSLLLEDNTTFLSREDTGKLIIQAN*
Ga0102976_102944612	F014610	GGA	MPIYTFENNGKTIEHIAPMGTDSIVIKGERWMRQPVARFGVTGFAREAELKDHVKKGFSRLEDRQGSRFESTFTKSQIRKIWDI*
Ga0102976_10294466	F031459	GAG	MQHNSDGSTNGVAISLATATAAGIVSLLPQLTQWFQFGAAVLAFLAAAVGLWKALKK*
Ga0102976_10294467	F001272	N/A	MVKIELTTEQANNLLQLIDIAVKAGGIANAKVGLPLAEIIINAAQPKPE*