Scaffold Ga0102976_1027097

Overview

Basic Information

• Taxon OID: 3300007169
• Scaffold ID: Ga0102976_1027097
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4670
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.286816
  • Long. (^o): 103.867024

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021515	Metagenome / Metatranscriptome	218	Y
F039598	Metagenome / Metatranscriptome	163	Y
F040488	Metagenome / Metatranscriptome	161	Y
F097188	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102976_10270971	F039598	AGGAG	MGTLVVVLLLAVAGWIVWKLVKKPDLNNDGKVDAQDVLVAAKEVAAEAKAGAAKAAEKVKKARKKKAE*
Ga0102976_10270974	F040488	AGGAGG	MRYLIALSFLFLVGCGNPLTRLVPKIEMPSPPNELMQAPKPLKTLVPPTTTTPQAELTRDVPPK*
Ga0102976_10270976	F021515	N/A	MIDFESKISKLEAEVAAIKEKVSFFSVIYEKFDKTLEKLDERQNEDRKDLQLMIDDLRNDIMQEMKAFREEAAAQHQSQQKKIEELNKWRWVVVGGAAVAGWLISKLGLPFELK*
Ga0102976_10270978	F097188	AGG	MQSLEDAGYEVIKHPIKRVRVQFHGGLWYVEYQRPPQYVIDGWWWFDDSKHPEYKDAFVRAQELAAEGGTKEIRHKTLTFEVE*