Basic Information | |
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Taxon OID | 3300007169 Open in IMG/M |
Scaffold ID | Ga0102976_1027097 Open in IMG/M |
Source Dataset Name | Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | The Singapore Centre on Environmental Life Sciences Engineering |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4670 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle) |
Source Dataset Sampling Location | ||||||||
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Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.286816 | Long. (o) | 103.867024 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F021515 | Metagenome / Metatranscriptome | 218 | Y |
F039598 | Metagenome / Metatranscriptome | 163 | Y |
F040488 | Metagenome / Metatranscriptome | 161 | Y |
F097188 | Metagenome / Metatranscriptome | 104 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0102976_10270971 | F039598 | AGGAG | MGTLVVVLLLAVAGWIVWKLVKKPDLNNDGKVDAQDVLVAAKEVAAEAKAGAAKAAEKVKKARKKKAE* |
Ga0102976_10270974 | F040488 | AGGAGG | MRYLIALSFLFLVGCGNPLTRLVPKIEMPSPPNELMQAPKPLKTLVPPTTTTPQAELTRDVPPK* |
Ga0102976_10270976 | F021515 | N/A | MIDFESKISKLEAEVAAIKEKVSFFSVIYEKFDKTLEKLDERQNEDRKDLQLMIDDLRNDIMQEMKAFREEAAAQHQSQQKKIEELNKWRWVVVGGAAVAGWLISKLGLPFELK* |
Ga0102976_10270978 | F097188 | AGG | MQSLEDAGYEVIKHPIKRVRVQFHGGLWYVEYQRPPQYVIDGWWWFDDSKHPEYKDAFVRAQELAAEGGTKEIRHKTLTFEVE* |
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