Scaffold Ga0102976_1018839

Overview

Basic Information

• Taxon OID: 3300007169
• Scaffold ID: Ga0102976_1018839
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2866
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.286816
  • Long. (^o): 103.867024

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F012013	Metagenome / Metatranscriptome	284	Y
F015988	Metagenome / Metatranscriptome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102976_10188392	F000868	AGGCGG	MSFLENENQMVIDAELQAIADHLLTEWINSNLDEGQLYSDYQIASMCDSNYLKGRFNQFYDLKPEDQYYLEWDEEK*
Ga0102976_10188394	F015988	AGGA	MESEYIARKTKLVEYIKLHVISLEQDIENISEEMEALDPASKDYNELDFEYNHCSGQLLATRHILSVVEDIL*
Ga0102976_10188396	F012013	AGG	MAELDLQEATRRDDIYNELVTIVDKITSLPVFPSLLWVWTFDIIKDIFDNNQFIHLAETDIADEVVPEGITLKLIFDKFWEDVDTLGFSMDQGDEILNECIRDWMRENDFLVSLDEDGWLDD*