Scaffold Ga0099959_1118412

Overview

Basic Information

• Taxon OID: 3300007160
• Scaffold ID: Ga0099959_1118412
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2032
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F002715	Metagenome / Metatranscriptome	535	Y
F002745	Metagenome	533	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099959_11184121	F002745	GAG	MKSFIQHLKEFAQFSTSDIVFKNRGQGSGSSALNIPISGPMFKRIWPDTIRTTVFHTTDLAGLEKLKKLEGGKKSISAFFSMMSRYMETGVATEGGIVAEMDADVLISARDDIMSEVDKQGRRWVMMSWFEYQTRERSKFGKIEKDLNTLIANLVKKHIPKDKEIQQTKHFGKDSGAVFDIWGNMKRHLKGDGKKLRLVIKDYFDGVEKVIKKNKKVMSDIFYGYAKSKRMTDNSWDEQIVNNIKIKKLHYLPKDEEVENEEQQENIDAFVAKYKIPSKRWEYSSELEIYTREVTQAEVR
Ga0099959_11184122	F000245	AGGA	MKTYTQFKEGKLDDKLDKYVSDEIKKRKLAKFPVNATDDIKMRMKPNKPAFKFPSPTGEMMIHVFLRPMEGKKGMMAFNYQLEDK*
Ga0099959_11184123	F002715	AGGA	MPEEELQTVKLEVGLLKNEVEVRGRQVDALLRKLEKTTDSLIELTVQIKTLNTRQQDHLTHDNAIREELKLLHTRIGSLHDKLIDDHKEIEKRLDALDQYKSKLMGMIIVVGGVVGTIVATAISIFIKD*