Scaffold Ga0099959

Basic Information
Taxon OID	3300007160 Open in IMG/M
Scaffold ID	Ga0099959_1068971 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_1000m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007160 Open in IMG/M

Scaffold ID

Ga0099959_1068971 Open in IMG/M

Source Dataset Name

Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_1000m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hawaii

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	1989
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

1989

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)	Depth (m)	1000
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

22.75

Long. (^o)

-158.0

Alt. (m)

Depth (m)

1000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002745	Metagenome	533	Y
F005336	Metagenome / Metatranscriptome	404	Y
F012510	Metagenome	280	Y
F082824	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099959_10689711	F005336	N/A	YKLEKEMTQMLMDLAIKHDPRNKEYLKTSPEIGVGVWWKLQTDLQTNFAKDKAGKKMALIIADYIDGVNVILNKHKKEIQGAVHGYYVRRGTIAVKHASGRMVGGDSELSEWNAWDEQVVDKIKIEKVHTYNTARRAGDWVKTDIIPNLGKIPHKHWKSAAELSTYISQVADAEVRTFGGWARKK*
Ga0099959_10689712	F012510	AGG	MRTFKSFYDWGKSLNEVYKDYPGKGWVHGTKDAPKINPKDIVWRSKVHHWDNTVRSDDTRMIITNTGKGKDKFQMWAVSDKSGDVVFHFGDKPTLDVAKEFASIRKWQEKK*
Ga0099959_10689713	F002745	GAG	MKTFKSYLTEFAQQSTSDYVFDTHTDNSSSLKIPISGPMFKRIWPDTIRTTVFHTTDLAGLERLGKLEGGKKSISAFFSMMSRYMETGVATSGDIHVVAEMDADVLVSARDDVWSTVDKTGRRWVELSWFANAQLGRTGPEFGKVEKDLNTLIKNLVKKHLTPILGRSKVQSTHEYELWSNMKSHLKAGREGGGSRLRLVIKDYFDGVEKVLKKNSEVMGNILYGYAKGKRMTDNAWDEQIVNNIEITKVHVWKTNRDDVWGEDEIKQHITDVHKWPMKVWDVAIDLEIYTREVVNAEIRTMGGWSKK*
Ga0099959_10689714	F082824	GGAGG	MKKKVSERTLTTKQAVVQMNHYWKDLDHMASDDTKKKSMKTRFGITNIKLDRNGKLVSFD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0099959_1068971

Overview

Ecosystem & Geography

Associated Families

Sequences