Scaffold Ga0099959_1055038

Overview

Basic Information

• Taxon OID: 3300007160
• Scaffold ID: Ga0099959_1055038
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2404
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013649	Metagenome	269	Y
F015350	Metagenome	255	Y
F043989	Metagenome	155	Y
F062843	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099959_10550381	F043989	N/A	MVTALIWKYGLYVIIIWTMFESSCSSGKGNLPYHPPEFAPIYREECYSDHKNFLCMDKEKDASYTSPFLYFLFMRETMEQ
Ga0099959_10550384	F062843	AGGAG	MNIWIEYWEKSKEPSKNTHAQIREQARWVPPDPKMVNKRFCQSREDAVIYARSMEEQGYHVIIKQDNGGY*
Ga0099959_10550387	F015350	N/A	MAILVGWQYDAALQKNLHEVEIRIKKFESVDLFNILEQISLAHIESIESVDILNKKQMELQALEKEIKEKFVIQERELRAQVKTIETKLQKLRSELNDGLTKIERNVSTIDSVVDEKFKTLWMMINNK*
Ga0099959_10550388	F013649	N/A	KSSTRKFRKGKFMSSILNKLSILERLPSHQRMTARDNAGKKSKKPKKHHYDEHFNKDWDKDLWD*