NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101663_1020406

Scaffold Ga0101663_1020406


Overview

Basic Information
Taxon OID3300007134 Open in IMG/M
Scaffold IDGa0101663_1020406 Open in IMG/M
Source Dataset NameMarine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', co6ic19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)1202
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → C. Singaporensis (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location NameUpa-Upasina 'control' site, Papua New Guinea
CoordinatesLat. (o)-9.828217Long. (o)150.820517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024330Metagenome206Y
F101313Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0101663_10204062F101313N/AMTSALKREFKVGDEVCHTNKFSTGNNFQRKRKGVVLGIERRPVKDGKLRTYIEVLWNTSSVPCFHASHALLHLSEREGAIKEASKCIAN*
Ga0101663_10204064F024330N/ASNPNSRPKKVTKYAYVIKNQVEWDRMHKRYVVLEGKGKQETQPIPLLHKDNRKAYEDACDVCGWNYKDKEARTLYVTDGTYISPTAIKRMRELS*

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