Scaffold Ga0102532

Basic Information
Taxon OID	3300007094 Open in IMG/M
Scaffold ID	Ga0102532_1041589 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (M13A)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	The Singapore Centre on Environmental Life Sciences Engineering
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007094 Open in IMG/M

Scaffold ID

Ga0102532_1041589 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (M13A)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

The Singapore Centre on Environmental Life Sciences Engineering

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3259
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3259

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Singapore - A Non-Axenic Oscillatoriales Culture (M13A)

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Singapore - A Non-Axenic Oscillatoriales Culture (M13A)

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.3991438	Long. (^o)	103.77518	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Singapore

Coordinates

Lat. (^o)

1.3991438

Long. (^o)

103.77518

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010898	Metagenome	297	Y
F017447	Metagenome / Metatranscriptome	240	Y
F032550	Metagenome / Metatranscriptome	179	N
F041609	Metagenome / Metatranscriptome	159	Y
F054611	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102532_10415891	F032550	N/A	MIIEENLEGWNNIPVKSKEVVYPQSKDDKAPKNYFLGIFCGSRGSGKSYLFTKLLKTLEEKKVYLDDKLVPQRIILISSTANSDSNLIFKTLKNLDWDNDVIEEYNDDLLIMKMEELKLDLNHSKDYKLYREAWKKFIHCKDIDELDDDELKLLYSYDFIPFKEFPKPKYPDGFLIHWIIDDMLGTNIFKNGRSTFTNLCIRNRHIIPGNIIIAIQSIMSVPKTIRLNA
Ga0102532_10415892	F054611	N/A	MVDIDEEKLQNLMELVIKEHPDLDPYVVWIISANYLLNEQGIYGDEKIAEQIREQRNKESGYNIRVI*
Ga0102532_10415894	F010898	N/A	MDKINIYINSKNRDLSETISNFTVRIPQNLLRLSQGEYFTLNVNGFYCYNSWFNCIDNFNNEFHIIIKNIDNEVIETYVYKLNDGNPNVNDVKSNLNNLLLNKVNITYDKQRNKFIFKRTLPVSTQQYRMYLKIINSEDFLGFIKVTEI*
Ga0102532_10415895	F041609	N/A	MKPIDVPSNGLLKYNNEDGGDSFQYRLANVEQITWFTLTVYNQDSELIPNFSDYILLLQFIRHKTEEGKVEILLNSLLDYVKQIYLMISHFLFPAMT*
Ga0102532_10415896	F017447	N/A	MNFGSRAISMFNRVAPKISRGIGQVADIGRNIGQVVKHRRNIGSIANQISGGRLSQSPIGQKIQDAANKIESGANFISGNEDRAQQALSTISRKINA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102532_1041589

Overview

Ecosystem & Geography

Associated Families

Sequences