Basic Information | |
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Taxon OID | 3300007094 Open in IMG/M |
Scaffold ID | Ga0102532_1041589 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (M13A) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | The Singapore Centre on Environmental Life Sciences Engineering |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3259 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Singapore - A Non-Axenic Oscillatoriales Culture (M13A) |
Source Dataset Sampling Location | ||||||||
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Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.3991438 | Long. (o) | 103.77518 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010898 | Metagenome | 297 | Y |
F017447 | Metagenome / Metatranscriptome | 240 | Y |
F032550 | Metagenome / Metatranscriptome | 179 | N |
F041609 | Metagenome / Metatranscriptome | 159 | Y |
F054611 | Metagenome / Metatranscriptome | 139 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0102532_10415891 | F032550 | N/A | MIIEENLEGWNNIPVKSKEVVYPQSKDDKAPKNYFLGIFCGSRGSGKSYLFTKLLKTLEEKKVYLDDKLVPQRIILISSTANSDSNLIFKTLKNLDWDNDVIEEYNDDLLIMKMEELKLDLNHSKDYKLYREAWKKFIHCKDIDELDDDELKLLYSYDFIPFKEFPKPKYPDGFLIHWIIDDMLGTNIFKNGRSTFTNLCIRNRHIIPGNIIIAIQSIMSVPKTIRLNA |
Ga0102532_10415892 | F054611 | N/A | MVDIDEEKLQNLMELVIKEHPDLDPYVVWIISANYLLNEQGIYGDEKIAEQIREQRNKESGYNIRVI* |
Ga0102532_10415894 | F010898 | N/A | MDKINIYINSKNRDLSETISNFTVRIPQNLLRLSQGEYFTLNVNGFYCYNSWFNCIDNFNNEFHIIIKNIDNEVIETYVYKLNDGNPNVNDVKSNLNNLLLNKVNITYDKQRNKFIFKRTLPVSTQQYRMYLKIINSEDFLGFIKVTEI* |
Ga0102532_10415895 | F041609 | N/A | MKPIDVPSNGLLKYNNEDGGDSFQYRLANVEQITWFTLTVYNQDSELIPNFSDYILLLQFIRHKTEEGKVEILLNSLLDYVKQIYLMISHFLFPAMT* |
Ga0102532_10415896 | F017447 | N/A | MNFGSRAISMFNRVAPKISRGIGQVADIGRNIGQVVKHRRNIGSIANQISGGRLSQSPIGQKIQDAANKIESGANFISGNEDRAQQALSTISRKINA* |
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