NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0080113_1010438

Scaffold Ga0080113_1010438


Overview

Basic Information
Taxon OID3300007084 Open in IMG/M
Scaffold IDGa0080113_1010438 Open in IMG/M
Source Dataset NameNon-marine hypersaline water viral communities from Salar Uyuni, Bolivia - ZN 5 Uyuni 2014
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Alicante
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)951
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Water → Non-Marine Hypersaline Water Viral Communities From Salar Of Uyuni 2014 (Chile)

Source Dataset Sampling Location
Location NameSalar Uyuni, Bolivia
CoordinatesLat. (o)-20.333333Long. (o)-67.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079661Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0080113_10104384F079661N/AMSRTTIEIPESTRDKLKQERQPHESNYGDTIERLLNDGSGGQLWTKREIQDLVQREIEQHTRR*
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