Scaffold Ga0098064_100066

Overview

Basic Information

• Taxon OID: 3300006988
• Scaffold ID: Ga0098064_100066
• Source Dataset Name: Marine viral communities from Cariaco Basin, Caribbean Sea - 24B_WHOI_OMZ_CsCl
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21356
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (73.53%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Caribbean Sea: Cariaco Basin
• Coordinates
  • Lat. (^o): 10.847
  • Long. (^o): -65.114
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003898	Metagenome / Metatranscriptome	463	Y
F016083	Metagenome / Metatranscriptome	250	Y
F021646	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098064_10006626	F016083	AGG	MANIGIKKYTAAEATSLAIGQLGFDLISEHDTNYSSPDSGSWVAIQALGKDSSGTSEFLKLKATCNIGDNLSSAYFYLIPGEILYGNFATILNHTDSTATCIAYRG*
Ga0098064_10006629	F021646	N/A	MRKILSILFYQIGHNADRLLWFISPTYEWCEDKLAYIYQWAMWRSVEYDDYYEIWQSNNQITR*
Ga0098064_10006631	F003898	AGGA	MIMDSLKVTTISTSLGLVYWTDIISGVLMCVMFSAQIYYLYLKTKKIKES*