Scaffold Ga0079219_10621877

Overview

Basic Information

• Taxon OID: 3300006954
• Scaffold ID: Ga0079219_10621877
• Source Dataset Name: Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 797
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.8834
  • Long. (^o): -83.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004392	Metagenome / Metatranscriptome	440	N
F050789	Metagenome / Metatranscriptome	145	N
F066496	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079219_106218771	F066496	AGGAG	MSEKNQIVVVLIVALSLGALIDRSTALKIVAGVVLLWTLQNQPVVF
Ga0079219_106218772	F004392	AGGA	MPVNGPETIADSKTSQPVASEGRSVRATRDTKPAVGRGAATRRRRDRHESSQANGEERFFLAGANRNGDVPTLGRECATEAEAIIEAFREKVNLYKVTEFQTRADIGRSGEPILRKETLRKNNPAS*
Ga0079219_106218773	F050789	N/A	TLGILPLILFAAGILLKPRAVQFIERRRKDRTTGTHDRRAHVDAGEKQDIARKETVERCQ