Scaffold Ga0075524_10046305

Overview

Basic Information

• Taxon OID: 3300006950
• Scaffold ID: Ga0075524_10046305
• Source Dataset Name: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1793
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: USA: Barrow Environmental Observatory site, Alaska
• Coordinates
  • Lat. (^o): 71.299
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015327	Metagenome / Metatranscriptome	255	Y
F015623	Metagenome / Metatranscriptome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075524_100463052	F015327	GGAGG	MGPNALVECVNELMRALKEELAERGTVTPAFILLHDSDCEVLSFSPRLFESPEGKAAVARAFRNRAHQTGAHGALVGLDSYCFIPDINAIREANPRLVQAAAGAGIDALVRSGFGRKSEGLSVTLQTPAFHLLVQQLYTRGDNGIVFGELQTFDSREVQMEAAGIFSIYSNQHVTRG*
Ga0075524_100463054	F015623	GAGG	MKQKLITVTLEPDGTSKIDLEGFTDNTCGKVMDDFRGGDRVLSERRKPEYYNHGRGQQVQQGNH*