Scaffold Ga0099826_10228576

Overview

Basic Information

• Taxon OID: 3300006948
• Scaffold ID: Ga0099826_10228576
• Source Dataset Name: Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 996
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Rhabditina → Rhabditomorpha → Rhabditoidea → Rhabditidae → Peloderinae → Caenorhabditis → Caenorhabditis elegans (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F103562	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099826_102285761	F103562	N/A	HQDYPVSDVFEGPLASTSRAYDVEGIPLEQHVSVYHSGRSDEVAPKEPEIKHAEPEGESFVGKLTGLFKRGTAHQDYPTTEVYEGPLASTSRAYEVDGIPLEQHVTVYHSGRSDEVAPKEEPAPKEPSTDAFARLAGLFKKGTAHQDYPTSEVFEGPLATTSRAYDVEGIPLEQHVSVYHSGRSDEVLPREAEVKHVEPEREPGESFVDRLTGLFKRGAAHQDYPTSEVYEGPLASTSRAYEVEGIPLEQHVTAYHSGRSDEVLPKEEPVAKEPSKDAFERLAGLFKKGTAHQDYPVSDVFEGPLASTSRAYDVEGIPLEQHVSVYHSGRSD