NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075444_10003757

Scaffold Ga0075444_10003757


Overview

Basic Information
Taxon OID3300006947 Open in IMG/M
Scaffold IDGa0075444_10003757 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8985
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015734Metagenome / Metatranscriptome252Y
F019756Metagenome / Metatranscriptome228Y
F050011Metagenome146N

Sequences

Protein IDFamilyRBSSequence
Ga0075444_1000375710F050011N/AMNVSIEKFSDYLKPYLLQTVAICTDKKIIRKGKLRIFQMKQHYARLTLEDEVRTRIYEIPYPFNIDTSGNTTTLSYKIDEFLNFDELELQVKLLDSTKKSKLYNNNVYIMPLAEVDL*
Ga0075444_100037578F019756N/AMAQRSIDTLATQKHLIDLSTHSEGDIGLTDDFELQMIFDDILLVEYVDENETGEIQRNGIFVPTNAITKAWRKARVVLIGPKTEYTKVGDVVIFPSNLGVTIANLDVNGKKVKKGIFLNEDRLFGICKLKDDSTEDNS*
Ga0075444_100037579F015734N/AMIVQRTTLDSLLLTKVCEVRFVRRRPRSGDGPTRRMLCTKSYEILNSVNGRTTLNYRPPSGPVQVNEVRDNLIVVWDILMQDYRAISMSSCDLIQDIPAVEFWEYFNENIYPMSPAQKFSFMNS*

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