Scaffold Ga0098036_1048115

Overview

Basic Information

• Taxon OID: 3300006929
• Scaffold ID: Ga0098036_1048115
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1327
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F007827	Metagenome	344	Y
F086160	Metagenome	111	Y
F089528	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098036_10481152	F007827	GGA	MKTTNKQKRSVKRRVELEQGVRPPGTRVFVSKKIYTRKIKHKK*
Ga0098036_10481155	F000126	N/A	MAQQSINMRDFNITRNEGEWYHAIVTDSYGNKYDNYFEHAHEANNWVYYIWEKEEWFNSVNSQELLANAIANLARIDEENNINKII*
Ga0098036_10481156	F089528	N/A	MYEALEHWNEYQKKKRAQQELDKLINKLVTKNGTTKY*
Ga0098036_10481157	F086160	N/A	MTRNELKNLWFSIPKQVNKKEMKVIVVDINSGFYKITTDVEGYYSTSSQYVGDNVLENVLNRIKVNDGINDLSKYELIIK*