Scaffold Ga0098034_1051868

Overview

Basic Information

• Taxon OID: 3300006927
• Scaffold ID: Ga0098034_1051868
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1208
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018942	Metagenome	232	Y
F078824	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098034_10518681	F018942	N/A	VDEWKANRVGNFKFIVAMELIIAGVKITPEDVLKAVWKKILVWFWDLQFKNALADNEGMLKKLRELGSG*
Ga0098034_10518682	F078824	AGGAGG	MLETGLTHNTTVELLHQATLQLVQEHPQRFEQYVKFFEFGCMYLQDESDEIPEVDKIGR*