Scaffold Ga0098057_1055252

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098057_1055252

Scaffold Ga0098057_1055252

Overview

Basic Information
Taxon OID	3300006926 Open in IMG/M
Scaffold ID	Ga0098057_1055252 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	973
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.61	Alt. (m)		Depth (m)	250
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012031	Metagenome	284	Y
F034540	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098057_10552521	F034540	N/A	MATGDTTISIAVEGGVTKSVVLDSATRVLARAYVEGSDDTIDTDAEWQIFEVNKLAKVILAQANSQAQAAASWTPKTFTAAT*
Ga0098057_10552522	F012031	AGGAG	MATGDITIVVTVEGGTAKTATVPTATRINALAWMNRSRGDADNPNLTDATYSVHLANSTANGVIHAAEKQLITAAAPTTPTYTAAS*

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