Scaffold Ga0098050_1085135

Overview

Basic Information

• Taxon OID: 3300006925
• Scaffold ID: Ga0098050_1085135
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 813
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004165	Metagenome	450	Y
F041490	Metagenome	160	Y
F053300	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098050_10851352	F053300	N/A	LKEIDQMLDQWIHSSVIRAKLRELIVKENFKSFDLGVEYKKELKK*
Ga0098050_10851353	F041490	N/A	MTKEEMKMMFLQMDCSNVPVRKEIIVDLRYLDNKWWPNYGHVEILSDGPDGYSSFSTHQENPLQYAKDRMSEGFDGLRDLSKYKLIIKE*
Ga0098050_10851354	F004165	GGAG	MSKLNNKQKSKIRREVDLDLGVKAPKTIVFKSKKIYSRKIKHKKYD*