Scaffold Ga0098050_1030839

Overview

Basic Information

• Taxon OID: 3300006925
• Scaffold ID: Ga0098050_1030839
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1456
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028039	Metagenome / Metatranscriptome	193	Y
F104992	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098050_10308392	F028039	AGGAG	MTTDIKTERWETIIKEIKFENRWKTTLEKHLKDNNLTELPEPEWSEDPTMAYIYLPARSLNGDAVRMDKTKARMFPESIVGYLEKGGLMKLPAKVEASKDEEQLPKMETEKPNKPEKIKLPKIGE*
Ga0098050_10308393	F104992	N/A	MTVGTRQYESVNSTTTTMSGNADLTITAASDKLQVVDPGGSARNLDLVFVDSSETGVTTGFAEVYIQNEADADEGITIRDGNNSDNAIGVLDQNAGGWFRFVGGQWVSSTSGLN*