Scaffold Ga0098050_1015044

Overview

Basic Information

• Taxon OID: 3300006925
• Scaffold ID: Ga0098050_1015044
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2208
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061778	Metagenome	131	N
F095310	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098050_10150442	F061778	AGGAGG	MNKYNVAVHYEEGFSVEVTAPNVEDARKLAQELVDTYCGVSESFDNVGQDEGKYLKTYHRDCWIVGER*
Ga0098050_10150447	F095310	GAG	MLHGTWKTIATFQGEVDNMKMFLIKLLTTLAVFLTMYVSIIIVNDDTVENTDEIMTLNRKVQSLEETLQAVKEQQNYLQIMHKGLRDALDNRTVEVDRLVEQAVDDKFNEQSATGGFGVLTGEVLPVEKVVEEVVE*