Scaffold Ga0098045_1000102

Overview

Basic Information

• Taxon OID: 3300006922
• Scaffold ID: Ga0098045_1000102
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35747
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045767	Metagenome / Metatranscriptome	152	N
F101085	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098045_100010235	F101085	N/A	MSGKFTPHNDNEKPQNNSMVDMINRLLGRIFLKKPVFFGMDEHKITLLVSPSMKIYGIYTSPDRLLKKFPFDEKKFLNLKDLRLWAENNEFSITFSAETPKLKRDLLMSLGDVMVESKGGKERSLSVVVMEELKKSKLPDSIKEWAKENPEKFIRNIRHVQNILKK*
Ga0098045_100010241	F045767	N/A	MFGKNKINKMGIQDSIRRNIKILQEEKKVSLTEEKIVKGRFSMVPKNINKHSTIQNNKTFNVLFNEVRTLKSHGINQKVINENMVQVLSQMFDEEGPRFLDIVKEKLAEYLKSKLQLTDIEQEILVSAIGNTEMDEVSELFNDPRFLAQKIAQAYSEDMGSKYSMVSTDNSDMVKKLEDTFVDKLKPVIGDVNSNMELKLKDIRDNMLS*