Scaffold Ga0098060_1000144

Overview

Basic Information

• Taxon OID: 3300006921
• Scaffold ID: Ga0098060_1000144
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33944
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023453	Metagenome / Metatranscriptome	210	Y
F025145	Metagenome / Metatranscriptome	203	Y
F038861	Metagenome / Metatranscriptome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098060_100014451	F038861	N/A	MNKWTKYKTSHEGVGTFVSVWLDEDNGLVKRTFDGDHCGEGISKRTSKADILFKNEVYWLTFPELYRSKFLPELIDIDEESKTIIQRYYGPNLLDYYPDKFPISNLSEQILEMYRFFHEVGVNKLNGALSNMSLNGDQVIAFDFKWARPAPKANAKEVKAFRKWLTKLDPDLVEELVKIKSSSVVSDKV*
Ga0098060_100014454	F023453	N/A	MRIGEITKSETLYELEKWAKRNIPLLEDGSMDAERLSQTLLQKAVNKFKKQPEPTEERTKDMEDYMSKLEDKLGNDEKVKTPIIKKFFGFFRAHPRMIGLGVMILMLLSPMLPSIAVVGLSLEKILSMILAGLYAMDIASPGVKTSIEL*
Ga0098060_100014456	F025145	N/A	MYLSYYLTFDTVLWYNCLTMKIKHKPQFNIEKVTAHYTKKDGVPVHYVCTSDLDESDRPFDIYYRDTPHPEHNNFYFGLYADDEDRMMICKADSIEKYQFGMISDQDEWVYSRSHHDLVETDSGNIDGGRKYIKRGGDLDNQKHVVAKIVDGEFVTGEKNV*