Basic Information | |
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Taxon OID | 3300006921 Open in IMG/M |
Scaffold ID | Ga0098060_1000144 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 33944 |
Total Scaffold Genes | 65 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 45 (69.23%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -16.21 | Long. (o) | -76.63 | Alt. (m) | Depth (m) | 30 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F023453 | Metagenome / Metatranscriptome | 210 | Y |
F025145 | Metagenome / Metatranscriptome | 203 | Y |
F038861 | Metagenome / Metatranscriptome | 165 | N |
Protein ID | Family | RBS | Sequence |
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Ga0098060_100014451 | F038861 | N/A | MNKWTKYKTSHEGVGTFVSVWLDEDNGLVKRTFDGDHCGEGISKRTSKADILFKNEVYWLTFPELYRSKFLPELIDIDEESKTIIQRYYGPNLLDYYPDKFPISNLSEQILEMYRFFHEVGVNKLNGALSNMSLNGDQVIAFDFKWARPAPKANAKEVKAFRKWLTKLDPDLVEELVKIKSSSVVSDKV* |
Ga0098060_100014454 | F023453 | N/A | MRIGEITKSETLYELEKWAKRNIPLLEDGSMDAERLSQTLLQKAVNKFKKQPEPTEERTKDMEDYMSKLEDKLGNDEKVKTPIIKKFFGFFRAHPRMIGLGVMILMLLSPMLPSIAVVGLSLEKILSMILAGLYAMDIASPGVKTSIEL* |
Ga0098060_100014456 | F025145 | N/A | MYLSYYLTFDTVLWYNCLTMKIKHKPQFNIEKVTAHYTKKDGVPVHYVCTSDLDESDRPFDIYYRDTPHPEHNNFYFGLYADDEDRMMICKADSIEKYQFGMISDQDEWVYSRSHHDLVETDSGNIDGGRKYIKRGGDLDNQKHVVAKIVDGEFVTGEKNV* |
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