Scaffold Ga0070746_10120869

Overview

Basic Information

• Taxon OID: 3300006919
• Scaffold ID: Ga0070746_10120869
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1294
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040577	Metagenome / Metatranscriptome	161	Y
F048887	Metagenome	147	Y
F068602	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070746_101208691	F040577	N/A	MTQLQKISSEIIEIFQNKINKLTTEQAENLNIHNNSMNFYMQLGDEEKALWEARKTLEYLEEITK*
Ga0070746_101208692	F068602	AGGAG	MDDNDPHAEEMLEKSAFIVKALENNIHHYSDEQVAQLLLMQQSMEFSLKEDNTDKAIIECRNLYNYISEITS*
Ga0070746_101208693	F048887	N/A	MHIRREIDNLLDKMNQIIANKKDANKDCPELNKILDEIRRKTDNGKRAKGMWTNSPEFMSIK*