Scaffold Ga0070746_10052134

Overview

Basic Information

• Taxon OID: 3300006919
• Scaffold ID: Ga0070746_10052134
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2132
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001873	Metagenome	623	Y
F002942	Metagenome	518	Y
F004131	Metagenome	451	Y
F052561	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070746_100521342	F052561	GGAG	MRKLSDIWLIGSKLAKHLQVSKTGLYRAADSGELRTSAIGCGRLATTIQEAERWLRQSRA
Ga0070746_100521343	F001873	GAGG	MKWWNVLAALAVLAGVADAEILMMSHDFSELQDPFWAMETDGKGTLIQWDLTDKGGGGAVWLNADGFHNNHLDREYIAHGYRYGMKRIPGAPVDDISEFITNDWIQHHRDGAVEFGGNDSRGMVEFYAERDISLDPGYLDITLRNDHEYAQWRVNGQLLYEHITGESSLKTFRYDLPEGTEDLRFDFSGSGTADGVIERIEYHQYGTTVPEPSIGDLIDLIGNGVGGLIGW*
Ga0070746_100521344	F002942	GGTGG	MTEEQFTAFCVLLAAVSLPSVSLLFAGAWEFWSYSKRVEP*
Ga0070746_100521345	F004131	N/A	MMTMRATRTTVVADVTEFPFSIMKRQDITPLMREAAELLWPAERRRVTVLLRAPEYWDESENADLEASEELADICFDLWVGARG*