Scaffold Ga0079216_10004247

Overview

Basic Information

• Taxon OID: 3300006918
• Scaffold ID: Ga0079216_10004247
• Source Dataset Name: Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4306
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: North Logan, Utah
• Coordinates
  • Lat. (^o): 41.7655
  • Long. (^o): -111.8143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019175	Metagenome / Metatranscriptome	231	Y
F067620	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079216_100042473	F067620	GGAG	MASHYALVSHGRVLGYTAAAFPAEEMPAGTNAWHLVPTPAFDAVEPIIAELSAPPTLSLVEEVLPTRDEYLHPTWNEHEAQMDRLVDEAPRIHQFRLALERYEGLDLELRDASGRRLATTTLLVTKQMVPTDALRAYVEVIDPQEAHLVDATEPCYLLMARVAHESAASAA*
Ga0079216_100042475	F019175	N/A	MALPSDDDPLANFELPPDVMSSTFEHAISDAAAIAHERGHSVAAGLQRKLKGSIVEYSFSGIVTAHLRSGAVARCGGPTIGWRVTVEREPGAEPETLDVDLAPGETDTKLIVERLAKVLKRR*