Scaffold Ga0070750_10022238

Overview

Basic Information

• Taxon OID: 3300006916
• Scaffold ID: Ga0070750_10022238
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3209
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010471	Metagenome	303	Y
F013377	Metagenome	272	N
F021206	Metagenome	220	Y
F049285	Metagenome	147	N
F081883	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070750_1002223811	F049285	AGGA	MKLIKVRVNKTIEYEVSVPVQEDSRYEHIADYLQTIDWNKEIKVSPQNYKHIAEYYDWLDWEAVQNG*
Ga0070750_100222382	F013377	GAGG	MTKKILKHWALFYKNGERHFINAPTRAELDSAVFEGAYAPRFDSVTYYVEYERDIKDTGHNQVHEVHLK*
Ga0070750_100222383	F021206	N/A	MTVTLNQLLEMENVLATRKIPSDIAAMAKAKRYSESKQKVITLGEQPLHYVLRILAKEGLDKNA*
Ga0070750_100222385	F010471	AGGAG	MKQLTLAINKEAHPEYNNNQIAQILGLLPLWVAEHVGNDDDTDLVQFMEDRYGFGKLYKFEGTVNEDGNYVSSYEEDPDLPYMGKMITKHGYAYFYEHAIVALPQPDGKHFITRMD*
Ga0070750_100222388	F081883	GAGG	MTPRIEKVYNLIYYSDFDEAEIKQLAIGLLGMTLNDMAWHQTANTVSSYKLDDEIELDFDEGDNLR*