Scaffold Ga0070750_10005000

Overview

Basic Information

• Taxon OID: 3300006916
• Scaffold ID: Ga0070750_10005000
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7208
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028039	Metagenome / Metatranscriptome	193	Y
F041493	Metagenome / Metatranscriptome	160	Y
F086164	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070750_100050004	F041493	AGGAG	MTTKQQDYFIKEIDNNEEHLYTTIFDSVSGDPFRVKTDRIGHYLSKVKRKSKLQGDKLVFSDEYVKAFVKTKEEIIGSPSSGKADRVAPVSQVNAGKRRRGRRGRKK*
Ga0070750_100050005	F028039	AGGAG	MTTLLDRWETIIKGIKFEKRWNDILEKHLKDNNLKELPEPDWSDDPTMAYIYLPTRSLNGDAVRLDRSKARMFPESIVGYLEKGGLMKLPAKVVASKTEEQLPKMETEKPKPQKIKLPKIGE*
Ga0070750_100050007	F086164	AGGAG	MAFGHEKLAVDATVRSLTVPVDVNFAQVTVETAAIRYRLDGTDPATAVGVLINAGDSFCIYGVDTLRNIKMVEATSTDSVINVSYGTANNGIHGVVITGTA*