Scaffold Ga0070750_10000377

Overview

Basic Information

• Taxon OID: 3300006916
• Scaffold ID: Ga0070750_10000377
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24821
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (3.45%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022315	Metagenome	215	Y
F069453	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070750_1000037719	F069453	N/A	MDKITFDEIISILAMHGRPDLIQEAEEHIKIDEDYKPPSFNRRDSLSISEGSASSEEEYEIHIDENGLQSLK*
Ga0070750_100003777	F022315	N/A	MIIDKSHSKKDIVHLFRKLGVIIDDELTKGKIVSNIEEYFKDVIYNDKIKNCTELKEYLKKPSIKQRPTTQQKRDIMFRAKKIIKWGKNDYIFDMETYKDESDPFDDIMNIYMWGDLPSVRRACRFYNLSIYSKDHINPIISEEVEEEMNQNKIIKQQYIYKLTIKRTTKENPIIIRFD*