Basic Information | |
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Taxon OID | 3300006893 Open in IMG/M |
Scaffold ID | Ga0073928_10004192 Open in IMG/M |
Source Dataset Name | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 21707 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (82.61%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Banff | |||||||
Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000410 | Metagenome / Metatranscriptome | 1170 | Y |
F000900 | Metagenome / Metatranscriptome | 845 | Y |
F001932 | Metagenome / Metatranscriptome | 615 | Y |
F003314 | Metagenome / Metatranscriptome | 494 | Y |
F015125 | Metagenome / Metatranscriptome | 257 | Y |
F066997 | Metagenome / Metatranscriptome | 126 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0073928_1000419215 | F000410 | AGG | MPRKLVWVEEGRFHGFACSECSWRFEPSAAPTGKSFDEMMKNFELRRDKEFTSHVCADHPKTKRSM* |
Ga0073928_1000419216 | F015125 | GGAGG | MTDQDASRSQNIKYPHWQREFEAALLEGDPQTLRQRVDAAETAIFLRSQALVGNAQGHAEQQAISDAIRTLRAIQKEKLGYPDWNK* |
Ga0073928_1000419218 | F003314 | N/A | VAKIGQLERNQFRHTLAMTTKTIAAYLEDERQKGRDTQLWTEEEAARIQPLRHGHHRTAKQPKLEMPSAVKTAPKARKTAAATRKKPRTARKTTTKARKVA* |
Ga0073928_1000419219 | F001932 | GGAGG | MPRKLALWVVLLIVGFLTGFILQYARLQRAQQELSASTKQLGSCQATEQLSQLRDTATAMFLEAVQKNYGKAGEYSKEFFDQAQRIQSSTEDPAVRNLLRDTLATRDQITADLAKGDAALSEIQPLVSKIEQTAKH* |
Ga0073928_1000419220 | F066997 | GAGG | MPHGAASSLQGAVRKIIIKPVIPGEAEKVQISVQSGSNPNQRIRIANTLINDRGEEVPLKKGAAVCL* |
Ga0073928_100041929 | F000900 | AGGAG | VGLGTEILFALMLGFLVLGPKRLQTMLLDAARAKAKFVEASRGFKSQLAAELDTDSGAGKTDCSEESVGDDELG* |
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