Scaffold Ga0073928

Basic Information
Taxon OID	3300006893 Open in IMG/M
Scaffold ID	Ga0073928_10004192 Open in IMG/M
Source Dataset Name	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21707
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (82.61%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

21707

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (82.61%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000410	Metagenome / Metatranscriptome	1170	Y
F000900	Metagenome / Metatranscriptome	845	Y
F001932	Metagenome / Metatranscriptome	615	Y
F003314	Metagenome / Metatranscriptome	494	Y
F015125	Metagenome / Metatranscriptome	257	Y
F066997	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000419215	F000410	AGG	MPRKLVWVEEGRFHGFACSECSWRFEPSAAPTGKSFDEMMKNFELRRDKEFTSHVCADHPKTKRSM*
Ga0073928_1000419216	F015125	GGAGG	MTDQDASRSQNIKYPHWQREFEAALLEGDPQTLRQRVDAAETAIFLRSQALVGNAQGHAEQQAISDAIRTLRAIQKEKLGYPDWNK*
Ga0073928_1000419218	F003314	N/A	VAKIGQLERNQFRHTLAMTTKTIAAYLEDERQKGRDTQLWTEEEAARIQPLRHGHHRTAKQPKLEMPSAVKTAPKARKTAAATRKKPRTARKTTTKARKVA*
Ga0073928_1000419219	F001932	GGAGG	MPRKLALWVVLLIVGFLTGFILQYARLQRAQQELSASTKQLGSCQATEQLSQLRDTATAMFLEAVQKNYGKAGEYSKEFFDQAQRIQSSTEDPAVRNLLRDTLATRDQITADLAKGDAALSEIQPLVSKIEQTAKH*
Ga0073928_1000419220	F066997	GAGG	MPHGAASSLQGAVRKIIIKPVIPGEAEKVQISVQSGSNPNQRIRIANTLINDRGEEVPLKKGAAVCL*
Ga0073928_100041929	F000900	AGGAG	VGLGTEILFALMLGFLVLGPKRLQTMLLDAARAKAKFVEASRGFKSQLAAELDTDSGAGKTDCSEESVGDDELG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073928_10004192

Overview

Ecosystem & Geography

Associated Families

Sequences