Scaffold Ga0073928

Basic Information
Taxon OID	3300006893 Open in IMG/M
Scaffold ID	Ga0073928_10001948 Open in IMG/M
Source Dataset Name	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0073928_10001948 Open in IMG/M

Source Dataset Name

Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37738
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (85.42%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

37738

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (85.42%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002349	Metagenome / Metatranscriptome	568	Y
F002450	Metagenome / Metatranscriptome	558	Y
F016337	Metagenome / Metatranscriptome	248	Y
F060172	Metagenome / Metatranscriptome	133	N
F099744	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000194811	F002349	GGAGG	MIVCFANQCEYCRSSIVPGQRWVREKIYDAALNGRDPSYHRYHAELFATQRESCWEKHQLEREMARTTTCAA*
Ga0073928_1000194812	F099744	GGAGG	MFLSSFDNLKRDRCGNHTLLAVAGDLETARLRLSQFASLTPGEYFVFDPRTQQIVAAMHHWGDRQVR*
Ga0073928_100019482	F016337	GGAG	MQNTVTSVLGFLMLFSSASQQERPRELKGAGHLLGETADRFFSEDAVGQLLVACQAGDWKAVKQLAKSVNPASKPNARDICSKVALVKQQATSGARQEYGGGDDKTMRTYTFTLDGGHLVRIDMVFNVSTTDVEGYHPKYFAELFEGLREAYGEPSKSYTEPVFDVYGVKYDAHRAEWMGKQDVITIIEQPGRNGRTEIVVETLAERNRATKAPKTANPLQ*
Ga0073928_1000194843	F060172	AGGAG	MKTKFTRIIAIVTFGLIAICTSASSASAQNAFRGKFTLPNDVRWGNASLPAGDYTFSLSSTTMSGRVFLQGPNGGAFILTSVIDERNEGDSSKLTIEYRGGTSFVRSMYLADLGVELTYHAPKTPKQDVVLAQGPVSTEQVLIAKK*
Ga0073928_100019487	F002450	AGGA	MMETSTAEHTNRLATNRIAAHLPLFIYGSLLGGDPFYEETFTISINETGGLIWMAGRVEPGQQIMVTNQANDQTQECVVVSVVAQPAGRYVAFRFSTPMPQFWHGLEIGKGTLRSWVEYFIEALILQIRGDRTPEKPVKLL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073928_10001948

Overview

Ecosystem & Geography

Associated Families

Sequences