NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073928_10001469

Scaffold Ga0073928_10001469


Overview

Basic Information
Taxon OID3300006893 Open in IMG/M
Scaffold IDGa0073928_10001469 Open in IMG/M
Source Dataset NameIron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45097
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (52.17%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004512Metagenome / Metatranscriptome435Y
F011789Metagenome / Metatranscriptome287Y
F024668Metagenome / Metatranscriptome205Y
F033936Metagenome / Metatranscriptome176Y
F039750Metagenome / Metatranscriptome163Y
F072646Metagenome / Metatranscriptome121Y
F095804Metagenome / Metatranscriptome105Y
F097720Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0073928_1000146913F097720N/AMANFSDSHSWMFHGFPELDPDAILRQRRPGEKVLATEEERQRAWWLWRRRPREMNVFVYGSLLGIGAMAHTPFLILGSLQLFCVFHAGYILFVLWVVGMFFAKEARYRRWKKDYLRAIARLAR*
Ga0073928_1000146930F024668AGAAGMTAIGAKVVAVDNLGGRYRVIVRIGFPRYHGSFLTLKFGEQKPFTGFTHNGLLDLVYHEDPHLKAGQPFPLWTIQ*
Ga0073928_1000146931F004512N/AMTPIPAKVLTVAKQSSQYRVLVQIELEKYVGSFHTLVFGKRRPFTGSCYKGQLDLFYYRDPGLKVGKPFPLWTIK*
Ga0073928_1000146932F072646GAGGMIAKQRGEGAHLLDALWLRTLGDVTSLRSLGFQCRNIGQKIAEHEISEMIEYLEESETKRKSDRNWRPRPVIN*
Ga0073928_1000146936F095804AGGAMRTLVAFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTEALQTQLRQFGDQIKGMKLPQPENTSPTASPSATPK*
Ga0073928_1000146937F033936N/AMELRASTSNNGLVKAENRMNIGVIDEGKRDQIDSRLSYSPSLEAAVNLILGDPAFVGDRATPAFKLLRAARFLKDSAPHVFQIDEMGTVAKNGMDRWLWDLLDQ*
Ga0073928_1000146939F011789GAGGMKTLNAKALSVLKSQSYRTRDKSDNQTLIEIWRMHVSYPGLETVYEVELREPLRSLASKKYTVGLNGLVEFEMFSDPQVAAGDSLQIDAYEPGEMILGGGVL*
Ga0073928_1000146945F039750N/AMSTESKEETVDKKNTGNIEVRMVPEGTFAGTIQKPMLVKDGAPVPENTGDEGGGQN*

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