Basic Information | |
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Taxon OID | 3300006893 Open in IMG/M |
Scaffold ID | Ga0073928_10001469 Open in IMG/M |
Source Dataset Name | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 45097 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (52.17%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Banff | |||||||
Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004512 | Metagenome / Metatranscriptome | 435 | Y |
F011789 | Metagenome / Metatranscriptome | 287 | Y |
F024668 | Metagenome / Metatranscriptome | 205 | Y |
F033936 | Metagenome / Metatranscriptome | 176 | Y |
F039750 | Metagenome / Metatranscriptome | 163 | Y |
F072646 | Metagenome / Metatranscriptome | 121 | Y |
F095804 | Metagenome / Metatranscriptome | 105 | Y |
F097720 | Metagenome / Metatranscriptome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0073928_1000146913 | F097720 | N/A | MANFSDSHSWMFHGFPELDPDAILRQRRPGEKVLATEEERQRAWWLWRRRPREMNVFVYGSLLGIGAMAHTPFLILGSLQLFCVFHAGYILFVLWVVGMFFAKEARYRRWKKDYLRAIARLAR* |
Ga0073928_1000146930 | F024668 | AGAAG | MTAIGAKVVAVDNLGGRYRVIVRIGFPRYHGSFLTLKFGEQKPFTGFTHNGLLDLVYHEDPHLKAGQPFPLWTIQ* |
Ga0073928_1000146931 | F004512 | N/A | MTPIPAKVLTVAKQSSQYRVLVQIELEKYVGSFHTLVFGKRRPFTGSCYKGQLDLFYYRDPGLKVGKPFPLWTIK* |
Ga0073928_1000146932 | F072646 | GAGG | MIAKQRGEGAHLLDALWLRTLGDVTSLRSLGFQCRNIGQKIAEHEISEMIEYLEESETKRKSDRNWRPRPVIN* |
Ga0073928_1000146936 | F095804 | AGGA | MRTLVAFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTEALQTQLRQFGDQIKGMKLPQPENTSPTASPSATPK* |
Ga0073928_1000146937 | F033936 | N/A | MELRASTSNNGLVKAENRMNIGVIDEGKRDQIDSRLSYSPSLEAAVNLILGDPAFVGDRATPAFKLLRAARFLKDSAPHVFQIDEMGTVAKNGMDRWLWDLLDQ* |
Ga0073928_1000146939 | F011789 | GAGG | MKTLNAKALSVLKSQSYRTRDKSDNQTLIEIWRMHVSYPGLETVYEVELREPLRSLASKKYTVGLNGLVEFEMFSDPQVAAGDSLQIDAYEPGEMILGGGVL* |
Ga0073928_1000146945 | F039750 | N/A | MSTESKEETVDKKNTGNIEVRMVPEGTFAGTIQKPMLVKDGAPVPENTGDEGGGQN* |
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