Scaffold Ga0073928_10000069

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000069
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 229738
• Total Scaffold Genes: 243
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 103 (42.39%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000120	Metagenome / Metatranscriptome	2081	Y
F000959	Metagenome / Metatranscriptome	821	Y
F001218	Metagenome / Metatranscriptome	745	Y
F002158	Metagenome / Metatranscriptome	589	Y
F002837	Metagenome / Metatranscriptome	527	Y
F007669	Metagenome / Metatranscriptome	347	Y
F016407	Metagenome / Metatranscriptome	247	Y
F039818	Metagenome	163	Y
F102980	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000006914	F001218	N/A	VNGALIPALLAAFVIGSAFVKSVTAGEVTFLSPCECQGQKNGTRWPVKTDASPVPSDKSAIQSVTPSQICDWKGPESNVPLTPETDTRIADEQKWYNLTGRLVGVKVEADGDITLVLKDADGKKAGSVGAEIPVGPTWCELRQTVFGWTTQSFPFSFKESQKLEIREPHIITVTGKAFFDVQHASPDNSNRRTKQKKYAVWEIHPVMAMHIDQ*
Ga0073928_1000006916	F000120	AGGAG	MKKYSSIIYIVSLACAGLIFTGCATNQAAAPIPPNSGHLLINRVANFGSDLSLVVSVDGKDVGSFTEGRNYSGYLPAGQHQILVRVDPNPGGKHPGRKTLTVQAGQTYSFTAAWSGGKLVLVRNP*
Ga0073928_10000069166	F016407	GAG	LVVSLANDHGTMRGRSEDEQTLIRIQREWTEARVKGDSSYARRVEANDCTIVWPDGSIVNKQ*
Ga0073928_10000069186	F000959	N/A	MKPILQINDKQRRSRRDNRARRSHQSLPLTDYNYRPTAEGEAISTAGRPAIKSPPFHKLSSEFFGAETSRDYVAELSFFILITCLAAWPVMSMVIAVVRMIRNY*
Ga0073928_10000069204	F102980	N/A	MKYSQVNRGLSPDDAAAYVGSKELLRQFERAKWLKPFVRGNRLTRFDIRDLDGCIDRLKAGELLPNARAT*
Ga0073928_100000693	F002158	N/A	MKNLITLTGIASIGVVLALISACETTGTGGGVASQQGQVAAQTGGQPGQQLIQGQSLYPTLETAGPNNVEVQQFGGFGPMGTAALGDW*
Ga0073928_1000006953	F007669	N/A	MRTLTVRFFVAAVFLAAAAVAVANPFKSRIITGNDATLVITVPEDHFMKITNFTQEGGTERAVVTVKLGGESPGRTNVLTATRTDLNAGFNSQPEIGNRVIIAGPAEVSVQPVVGAKLFISYRKERDEGSGGGGVGASPTVIPIFSPTPGVTPTATPTPFIFPTPFGG*
Ga0073928_1000006970	F039818	N/A	MARQFRLILLMGVAAVIVCGVAVFYTHRTAHGTTAEEQAAYESGEKAGKEAPSSATLPTQAELNVVAQKYFEQQGPPEQLQNPSRAADLQAFKQAFEKGYNAGFQKTHPQK*
Ga0073928_1000006983	F002837	N/A	MPLEPCPTCGYALSIADHHCRHCATESRAIPSRAFNAKHLQQMIIMAAVVLSVLVYLIFLR*