Scaffold Ga0073928_10000006

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000006
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 664508
• Total Scaffold Genes: 615
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 457 (74.31%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Associated Families: 17

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000214	Metagenome / Metatranscriptome	1570	Y
F000378	Metagenome / Metatranscriptome	1211	Y
F000901	Metagenome / Metatranscriptome	844	Y
F001867	Metagenome / Metatranscriptome	624	Y
F002165	Metagenome / Metatranscriptome	588	Y
F002346	Metagenome / Metatranscriptome	568	Y
F002363	Metagenome / Metatranscriptome	567	Y
F003215	Metagenome / Metatranscriptome	500	Y
F004157	Metagenome / Metatranscriptome	450	Y
F005153	Metagenome / Metatranscriptome	410	Y
F005311	Metagenome / Metatranscriptome	405	Y
F005887	Metagenome / Metatranscriptome	387	Y
F008092	Metagenome / Metatranscriptome	339	Y
F008630	Metagenome / Metatranscriptome	330	Y
F018412	Metagenome / Metatranscriptome	235	Y
F032939	Metagenome / Metatranscriptome	178	Y
F080971	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_10000006109	F005153	GGAG	MQLFHVRYRNAQGALMRILNAVSRRGLDLTSVHAEYDGQQHSVTILLDVNHKQTGQLFREWYSIVDVIHVHSGAALREQEAPAWAAHAPASVGLAARAALA*
Ga0073928_10000006239	F002363	N/A	MNLELCAIVQLCLAFGVAGLFWPEKLMPLFNVLLFPWAASYRAVRANCWAAVGLAVLLLARLIVGIR*
Ga0073928_10000006263	F000378	GGAGG	MEDQASVSSNSTQSVSQRLVRSSRREGRGAWVLTAYGVSGLALFGLLAYFFSDFIAH*
Ga0073928_10000006296	F080971	GGA	MRLPNRRELRGKLHQLSTTGGLLQVEKPLDEKLKIELVFQLGETTVHEKAEMLFPMWATQGWLQPFRFIDLPEASRSRLETSLLLFVRGLQGPAS*
Ga0073928_10000006302	F000214	AGG	MKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKEMNSEMAKTSLPTAVNGPQQPIRIPAPPVVATAAQPVRAAGWDDTAKRWP*
Ga0073928_10000006305	F002165	GGCGG	MPERTDENVEQILARQQFDLDRLKNALALLGVHECSSCLKFFRRTDPGAMFDAGELICYGCIREWWPQRSAHLAPKEREDMEGRLVFWLRDYHHAELFKDPAKLPEESQQELNILANCLECHGTGKLMGGEDCRYCEGRGTVWVIVARKKG*
Ga0073928_10000006309	F004157	AGGA	MTHLMNCRLRWWLTASLAIGLVIPAVGQAGGENPYPAQKSKAVSGQGAAENGGGAVIEPAELPATYPRGPYHVSLHVRGNYVPVLRWRIEKGALPPGIKLDDGGTLQGEAQRAGEFQFVVGARDGGNPQQVVQREFTIKVVEAITVVWKVPAHVNVNRIEGSVEVSNATPEDMDLTFDVKAVAENGRATEIGYQHFPLKKGSIGMVLPFGETLPNGSYIVYANVNAEVAKRNAIYKQQLQTPGPLQVVVGP*
Ga0073928_10000006389	F032939	AGGAG	MTTEIRDASLVARIRKQLQATGSSSVKEVLLRLLETTE*
Ga0073928_10000006436	F018412	AGGAG	MSSGINPEAQQPTTTQAFEQSDRNPSVMDWGGDGGQIAAPGPSESRVTQAGAPVSPNAGLQNYDFGDSADSVEDEAEREG*
Ga0073928_10000006448	F005311	GGAGG	MGSGSGICGAALVRAANAMLTALGGDQVSLLLPATATAGDAAGQLGLVDPGVQEVIISPVVARNLPTGNAGPRRRIEVTLLASVIENQLPTLGLASAEDLFNAALGLSYDGDLFHIEAAVPENFAGTAYFYVVTAVE*
Ga0073928_10000006452	F005887	AGAAGG	MGINDRAIDMDFQREVLGKLIRLETKMDSLVGNGQPGRMKCVEDKVALLERNDLRNSVLNRVVTAVISAAVSGAIALHKYWLK*
Ga0073928_10000006453	F008092	AGGAG	MSTVPSTTIITNLKNLAAPTSNTTADATGYGLDMPGMLSLALTKAYELKLCLTAITSKTDGADPNLATLNDVLASLT*
Ga0073928_10000006475	F002346	GGA	MRLLDRICAGVVFILAIVDSWLVPRTYTGRIWILGTCLALLFTSMLNLLRIRNGYRMPGLKLFCITANVAMFVFAVATMASIGRSRTLANPQVPCIGLLLLAETAFSLRRNP*
Ga0073928_10000006478	F001867	GAGG	VPINSPDHVWFQKFLEFHCDDCGGEVGFRSRRRTFSERYLLPIFLLQPVRCAECFRRDYRLMFMPVKERVPEAMKKVATPVPRADRNVA*
Ga0073928_10000006562	F003215	N/A	MRGTIKTLRAVQWTMLGSIFLYAVVGEVVGSGARTGDPSLNYIFTTAGVAIVGAIFVVRRTLVLRSAESLASHPDDSLTLNHWKSGYIATYALCEALALFGLVLRFMGCSFEQSLPFYIGGFVLLFFFGPREPVSS*
Ga0073928_1000000668	F000901	GGAG	MALNGAAAYGIYPQDIALTDIVRNLNQAGFENEDICMMLSPGHPIASIVRDASLFNSEKEATAVTAGLIGWLSEFGAVLIPTVGFFIRSQAFFHALMVAREAPAMCGNARTLVGLGFSKEEAERFEDELEHLGVLVYISCVENAKTLWAKEVLRHTGALETATLEESRLTVAATA*
Ga0073928_1000000673	F008630	GGAG	MAYRISGNRIEAPLSPSPEALRHAFESAVCEIHRADCAAAKKMQYRAPIVPRAKILGLSKDGAEKRALSDAARALAQLWKV*