Scaffold Ga0073928_10000002

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000002
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 765630
• Total Scaffold Genes: 660
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 441 (66.82%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000279	Metagenome / Metatranscriptome	1383	Y
F002248	Metagenome / Metatranscriptome	578	Y
F003084	Metagenome / Metatranscriptome	508	Y
F005640	Metagenome / Metatranscriptome	394	Y
F005823	Metagenome / Metatranscriptome	389	Y
F014165	Metagenome / Metatranscriptome	265	Y
F016697	Metagenome	245	Y
F032558	Metagenome / Metatranscriptome	179	Y
F102681	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_10000002265	F000279	GAG	MTQKPENADIEEFMLPENLLPLGSVLGEGVTPLDVSMVLAKVFHVQYAEVALLRLEAGLLKFIFPEHLRTTGAIPISSKAIAAHTALSKKAEIFNNFARVKHASIFETIKPLGVETDDAPPTVAPIQKLMSVPILNRHSEVMGVIQISRKGLDPRLTQDFSREDLHDLELAAGVLAASPVMRSS*
Ga0073928_10000002290	F032558	GAG	MQKKPAARAISGVQCLRCKHEIDSYVFTKLNFLPYGSQGGNVMLECPKCGHLEFLSQNSPLLQRLKANPVAVGDGD*
Ga0073928_10000002350	F016697	AGGAG	MKRMNVHCTRTAVAYTLLCAFCLGLSLQCVAQSPGQPQTSRPVGAGSTLVHSKFGGQIFGFDIDQNGTEGVLSEDKLLNNGNVLAAVETFDQATGKILKVVGETETQDNFVTMGVVGTSVGLVEREHVTGLYVTKRIYEELNPLSGNKFTSTWKAPLNADQIIVGISRTQSTPTTAVLFFDNNNTFSTIVFGSDVAANTFGPQVTLTDSTFQFADTPQVGYDSVTNQAVVAASDGTVGGPAPQIALVDLTTGVVTQFTGILGPPPFHQGFINGLAVDSEDGIAVTTTELDFRVEFYNLSTQTGFAVVLPGANGQLQSGSDVEYDPVNKLFFVAQSFSSTGAGSSIQVYDINGNLVESLNGFNFSNAFNVIGTHIALNPRHRTGYVDGPDSGVTELQSFTY*
Ga0073928_10000002370	F014165	AGGA	MAVAKLKRPKENRLEELAERIAAEINERADKMTPENRARADAETKKIADRVRRRTLRG*
Ga0073928_100000024	F005640	GGAGG	MSPTEHHETEKALEELTKWGKNPNIDGGENINFSTSRQGAPSDAFLAFGDCTNFTPGGKRGTLNGAKVGNTGAPLAFFDNFGGTVAVLQQLPCTFSFDLNNGKVTLSGAFPNLPGTLSFHVAYLKTFDGAGGKNIMFYSEKTSDNAGYIIAMQLVGAS*
Ga0073928_10000002530	F102681	GGAGG	MYKYAVLVAVAAMVAMGLPSRPASTAGSWRVDVRHSDAQLITDATTDYGKTKLDVTLGFARVNGRVELDNDNLARSSFDLRIYPAGSMTPDIDEDGKFLSEWIANLSNHTLVCFHSKGAVRTPDGRIQTTGKLILTRVDRNVDATPSEAYAGPVYGPPMIHRASHEVTFVFDFPAADGKGQKDGVIAASGSTRMFREDYPQLLRAVVSTYWPPVVQDKSCPTPASAGEDYHGSQCTGTLLMAPSLPEAPYAGNAEDYPGPANFNALVGNHLNILVHLRLLARSSGQTPAGGD*
Ga0073928_10000002556	F002248	AGGAG	MDRRRESRVFVDLPVQIWGMDAHSRPFTQPASLRTISGRGATLQCVDAQLKPGDIVDVLYQGTKAQFRIVWCGKPGTTLAGEVGVENLTAGTKFWDVDPLRCAASVGQG*
Ga0073928_1000000294	F005823	AGGA	MIRNPAQPPISPSVTIHVSGVLSKGHISYLDQLVASAVECGLWPLINVAKLQELDRVALAYLMGGEGRHFGIVSCPNFIREWMQVEKQRRAA*
Ga0073928_1000000298	F003084	GGAGG	MSGKTAILAVVAVTLSMLGSSAAAQDEPNELTGMIGRIFISDQGIHGANAPLVNPFIRSGPGLSFEINYSRRLMGGDVFAISGEIPAVFNLDEDLNSGGDVVPTDYTQIFVTPAFRLNLFPATAVSPWVSIGGGIAHFSEGNTLIYGGKNPGGSTTSGVLQGGLGLDLNPFQHRFSHFGFRGEVRDFWSGEPDFPLAPTGKTRQHNYFVGGGVIWHF*