Scaffold Ga0075429_100003619

Overview

Basic Information

• Taxon OID: 3300006880
• Scaffold ID: Ga0075429_100003619
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13168
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049095	Metagenome / Metatranscriptome	147	Y
F084291	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075429_1000036193	F049095	N/A	MKTLFTLIAFSFITSVALAGKKDPSLTVTSTGEYVIIVDGKRFNNEKKISLTDLKKGTHYIDVFKKKKGLFGSKYKLVSSKQFEMTNKDLHIDVNFSGYITIGKQEKGWDGDYWKRNGAKESKDKRDD*
Ga0075429_1000036196	F084291	N/A	MKKIYLLFLLPIFISGCATRIQYVGKSFRPNGDPEVYVAESEIKKPYSIIGRGYIKVGVPSYGINWNQVQKKAIKTGWQHGADAVLIVQKNAISPVPAIQTYGSIDSVGRGLQSYSRTEAYYPLSTWHDILFLKYK*