Scaffold Ga0079226_10914051

Overview

Basic Information

• Taxon OID: 3300006879
• Scaffold ID: Ga0079226_10914051
• Source Dataset Name: Agricultural soil microbial communities from Georgia to study Nitrogen management - Poultry litter 2014
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 542
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.8834
  • Long. (^o): -83.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003406	Metagenome / Metatranscriptome	488	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079226_109140511	F003406	N/A	VKNDLKVREDIKDVIMCPIWQRFGLRKPKVEMDEVAEECQRAFGVVCSFIGTRDLIQEHIAFRVWPLADNWEMPKETVKETDEGGLIKLKYTFKYGDKFVEPDDDWLKSIETVSDELLGVYSKAEDTALSAAFGGRKKKRLNRVFDAIGFVYPDYRYPARGQKRKGTTSAKETASAAPSE