Scaffold Ga0079217_10945360

Overview

Basic Information

• Taxon OID: 3300006876
• Scaffold ID: Ga0079217_10945360
• Source Dataset Name: Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 622
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 41.7655
  • Long. (^o): -111.8143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038003	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079217_109453601	F038003	N/A	DVTSSTLVDQKVPTDSHPASFGFSLNPPSGLALAGALVEASPNPLGFRMRSPWDQLTDVSTYGPSGSEEDDEPNICWDFSGLDNPSAMRDFMTACDYCLSNCSDGSHSLGDEDCGPIRECFHIDLGGLGEGNHFGIPENGDPPRPAPRVDILRELAVVPVPAGGADPQLEQIRERQGRLDEGAGTLVPIRRDIGQEWAIQPPAGEAR