Scaffold Ga0075434_100228428

Overview

Basic Information

• Taxon OID: 3300006871
• Scaffold ID: Ga0075434_100228428
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1880
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018400	Metagenome / Metatranscriptome	235	Y
F088606	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075434_1002284282	F088606	AGGAG	MKLRLRTVFVAVGLLVLGSQSIGRAVEASAVGGGLVDGPLGLTSQLGFGATSAGGSFQCVMAGRSGGFTFGPWSEVLQMEVHGDVAPGSLTINPNGSAIFGGKAFVQVVGRGADGKILKAVFSDVDYSTTHTAGGPGEATHQLSVLGLIFGPATLKKGRITITP*
Ga0075434_1002284283	F018400	N/A	ILGVVFASAVLLTLSVGSRVVHGQAQHVRWDIVSLQFNTPPGMNTVSPGGVADASARNPNTLKIKLTGSGTFVAPVSGGPTGAVTGGGTWETFNGAVSTGSGTYVVTRLASWEFANFQTPGVNNDTIGPNAANGNAVLRIQYSDGSEGTLGIGCHGPGAPPGIVEGVIATKDFVTYWDAGAPAPGVNANRTSFHIE*