Scaffold Ga0075479_10015036

Overview

Basic Information

• Taxon OID: 3300006870
• Scaffold ID: Ga0075479_10015036
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3432
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021068	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075479_100150365	F021068	GGAGG	MADREDTIYAVCIPGQKVRYEAQSCIKPIMGGAFSIAQDERQQLREQGYAFDDEGAFLSPLNHFWGELSCVHWMILNACEPFIGNAQYRRKWVEPKDEWYDPATLYVPEPAEFGCSLEQQFYGGHKAFDAPALTRVMADSGKWIFSREEVDAVWAQSSFIGCNMARGSKQNYKRFMTVLFNGIVPLWEKHKELFLSIEGYDKRAIAFIAERLITGMVLYRDRLLPGMKIATAPIAFIP*