Scaffold Ga0073934_10000275

Overview

Basic Information

• Taxon OID: 3300006865
• Scaffold ID: Ga0073934_10000275
• Source Dataset Name: Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 154950
• Total Scaffold Genes: 138
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 96 (69.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 60.1987
  • Long. (^o): -125.5127

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015749	Metagenome / Metatranscriptome	252	Y
F054987	Metagenome / Metatranscriptome	139	Y
F076998	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073934_10000275119	F076998	GGTGG	MTDHFSSPQWVDFVRGLLDDKARTEIEQHLSDGCEACREAFDAWSGFARFAQAEAGFVPPADAVRVARTYLAQQQLRDRRATARRRSWGPSMLATLVFDSMQEAPAGVRAGAAYSRHLLFAAQSMAIDLHVENAARAGWYQLTGQIVDRTRPDQMPRRIELALVEGDAEISVFQTNAFGEFQCSFDRRRDLTLLFALESGEVALPLDVLFNTSNPGKPSSTVTQRS*
Ga0073934_1000027583	F015749	GGAGG	MVVRFKESVRVRVWGRELSSFRKGEIHAVPTAVASVLLAQGCAEPVADESTPDLRRAS*
Ga0073934_1000027590	F054987	GGAG	MKNSKWIAVAVLVLALGVVGVLFGWNLLPDGALAAERGTYAPWLGTWIMIWAVFGMTIVLAAFLFAVGTGRVRS*