Scaffold Ga0075459_1009162

Overview

Basic Information

• Taxon OID: 3300006863
• Scaffold ID: Ga0075459_1009162
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1618
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021759	Metagenome	217	N
F035302	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075459_10091623	F035302	AGAAG	MKRPYTGSKDGIAAGETKGLRVFINQMTEMYPALWNNGSYVNRPMRGKKTLSVHATGRAVDLSYRHMPKEKRGIAEGGRKQAMEAINFLVKNADAFGIEAIFDYFPMPHGRGWRCDRGSWSIYTKKTISGAPMGDWIHVELSPAMSNNPEAMREAFAKIKQEAV*
Ga0075459_10091624	F021759	GAGG	MDAGLAVVFAAVVAALGGIIVAIIEMRNLAKENRKDHAIVQKRLDNLIDMVGKQGAKLTSHLDWHLTKEPSKDLKVKQVATRKKK*